As for ANOVA, the **partial eta-squared** *η*^{2} can be used as a measure of effect size for MANOVA.

This statistic is calculated by

partial *η*^{2} =

which is equivalent to the following, where *b* and* s* are as in Property 4 and 5 of Manova Basic Concepts.

Wilks Lambda: 1 – *Λ*^{1/b}

Hotelling-Lawley Trace:

Pillai-Bartlett Trace: *V*/*s*

For Example 1 of Manova Basic Concepts, these values were calculated by the Real Statistics Manova data analysis tool in range L6:L8 in Figure 2 of Real Statistics Support for Manova.

sorry it should look like this

within——-between——-statistic——-value———-interpretation

intercept—-intercept——————————————none

intercept——age——————————————–effect of age alone

frequency—intercept—————————————effect of frequency alone

frequency—–age——————————————-effect of age*freq interaction

etc etc

Correction: the constant (intercept term in the model) is listed as a variable in both the within-subject and the between-subject factor columns in my manova table.

Within Between Statistic F-value p-value (my interpretation)

intercept Intercept none

intercept age effect of age alone

frequency intercept effect of frequency alone

frequency age effect of frequency*age

… …

Is my interpretation correct?

Hello I’m hoping for some clarification on MANOVA when there are both within-subject and between-subject factors. Can I assess the effect size of my within-subject factors separately from my between-subject factors?

In my experiment, the dependent variable is complex (i.e. bivariate and continuous); there are three independent variables: sample age (this is a between-subject factor, as each sample is only measured at one age), and amplitude and frequency (these are within-subject factors, as each sample is measured at all (3 levels) amplitudes and all (16 levels) frequencies.

In MATLAB, I have created a table similar to the one in your example on soil types. I have samples measured in triplicate at 7 different ages (3×7=21 rows), and the within-subject factors (3 amplitudes x 16 frequencies x bivariate = 96 columns). I then use fitrm() and perform MANOVA on the repeatedmeasuresmodel object that it produces, which gives a table of the test statistics. In addition to my between-subject factor, sample age, the default is to also add a constant to the tested model, which in the table is listed similarly to sample age as a between subject group. The table has Pillai, Wilks, Hotelling and Roy F and p values for all combinations of my within-subject factors (and their interactions) with the two between subject factors (sample age and “constant”). For example:

Constant , Frequency , Pillai p

….

Age, Frequency*Strain, Pillai p

How am I to assess the effect size of my within-subject factors separately from my between-subject factors? Specifically, I want to answer whether sample age has a statistically significant effect on my bivariate data irrespective of amplitude and frequency.

Many thanks in advance!

-R

Rory,

I plan to add some of the MANOVA capabilities you are asking about in the future, but trying to address your questions now would take too much time and would delay some of the things I am working on now. Sorry, but I will need to come back to your questions at some future time.

Charles

Hey Charles,

I was wondering if you ever followed up on this? Any help would be greatly appreciated re: effect sizes for within or between groups in MANOVA. The study design I have is looking at within groups (within the year 2010 group, with 2 groups of participants [level 1 or 2 of a program]; and within the year 2012 group, with 2 groups of participants [level 1 or 2 of a program]). I am unsure as to whether it needs to examine effect sizes (eta-squared) at the between groups level too, or whether I should just analyse within-groups, obtaining eta-squared for both and comparing. Does that make sense?

Any help would be appreciated beyond words.

Cheers,

Laura

Laura,

I added effect size for the MANOVA omnibus test. Regarding the effect size for follow up tests, you need to look at the webpages for the follow up tests: ANOVA follow up and Contrasts follow up. I need to add a Tukey HSD follow up test, but the Contrasts follow should indicate how this would work..

Charles

Hey Rory,

I have a similar situation (looking at within groups and between groups) and was wondering if you found the answer you were after! I’ve been asked to find “whether eta-squared/effect sizes in MANOVA are for within groups or between groups”, or which eta-squared corresponds to which grouping. Does that make sense?

Please let me know if you found anything – I’ve trawled through articles for hours now and still unsure!

Cheers,

Laura